PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03604_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 195aa    MW: 22140.9 Da    PI: 6.2541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03604_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1770120255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp   + k  r++lg++++  +Aaka++ a+ k++g
  Cotton_A_03604_BGI-A2_v1.0  70 HYRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTYDSDVDAAKAYDCAAFKMRG 120
                                 7********.**********9...6566**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3069129IPR001471AP2/ERF domain
PfamPF008478.4E-1370120IPR001471AP2/ERF domain
SMARTSM003802.5E-3570134IPR001471AP2/ERF domain
CDDcd000182.77E-2670128No hitNo description
PROSITE profilePS5103223.76270128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2270130IPR016177DNA-binding domain
PRINTSPR003673.5E-137182IPR001471AP2/ERF domain
PRINTSPR003673.5E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAATFEESTT LEFIRQHLLG DVATPDAFIN TLDFDLSHLQ PQSHQLPEIF THGVEPGPIT  60
KGPLCEEKRH YRGVRRRPWG KFAAEIRDPN RKGIRVWLGT YDSDVDAAKA YDCAAFKMRG  120
QKAILNFPLE AGEGSQPPAV TTGRKRRREK RVWLPESDVT SPGSSEMAWE VKEEEGELDD  180
DDRNGLSLLT RKHLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2769134469ATERF1
3gcc_A2e-2769134469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147RKRRR
2143149RKRRREK
3143150RKRRREKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1812510.0AY181251.1 Gossypium hirsutum ethylene-responsive element binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466914.11e-124PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY053e-44EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ5YLQ71e-126Q5YLQ7_G
STRINGPOPTR_0003s15060.13e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-44ERF family protein